The https://aksharamukha.appspot.com/converter service can take a multi-page PDF or image file.  But it does a less good job than https://sri.auroville.org/projects/sanskrit-ocr/

On Thu, 9 Jun 2022 at 17:16, Oliver Hellwig via INDOLOGY <indology@list.indology.info> wrote:
Thanks a lot, Harry, for explaining the technical background. This
definitely explains the strange encoding. For the time being, re-OCRing
it seems to be one manageable approach (already pointed out by Tim
Cahill), so I will try the Google cloud SDK which works in the
background of SanskritCR.

Best, Oliver